MedCATservice - implements the MedCAT NLP application as a service behind a REST API.

MedCATtrainer - an interface for building, improving and customising a given Named Entity Recognition and Linking (NER+L) model (MedCAT) for biomedical domain text.

What’s in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization.

Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset.

Comparative Analysis of Text Classification Approaches in Electronic Health Records.

Supplementing the National Early Warning Score (NEWS2) for anticipating early deterioration among patients with COVID-19 infection.

Treatment with ACE-inhibitors is not associated with early severe SARS-Covid-19 infection in a multi-site UK acute Hospital Trust.

Read more about MedCAT on Towards Data Science. TutorialĪ guide on how to use MedCAT is available in the tutorial folder. This was trained on MIMIC-III and all of SNOMED-CT. DemoĪ demo application is available at MedCAT. July 2021 (with respect to potential bug fixes), after it will still be available but not updated anymore. MedCAT v0.4 is available on the legacy branch and will still be supported until 1.

MedCAT is upgraded to v1, unforunately this introduces breaking changes with older models (MedCAT v0.4), as well as potential problems with all code that used the MedCAT package. MedCAT can be used to extract information from Electronic Health Records (EHRs) and link it to biomedical ontologies like SNOMED-CT and UMLS.

Free cat tool metacat